Defining a Structure to be Traced
MultiTracer version 2
Before you start to trace an anatomic structure, you should name the structure. The name that you
choose will also determine the name under which MultiTracer will save the
structure if you later choose to export the trace as a UCF file (spaces will be converted to underscores
and .ucf will be appended, e.g., "left caudate" becomes "left_caudate.ucf"). Consequently,
the name that you choose is effectively a file name. MultiTracer will promt for permission to
overwrite if a file with that name already exists.
MultiTracer provides a default temporary structure name for convenience. This temporary file name
includes the characters 'unexportable'. Any structure name with these characters cannot be exported
as a UCF file unless it is renamed. Consequently, you may want to enter your first structure name
by simply renaming this structure.
To rename a structure:
- Select "Edit Structure Name" from the main "Contour" menu
- Enter a new structure name
- Press the "OK" button
- If the structure name was successfully changed, the revised name will persist in the
control panel. If not, it will revert to the old name.
To define a new structure name by adding a structure:
- Set the orientation of the main window to the orientation in which you will draw the
- Choose a name for the structure (e.g., "left upper hippocampus")
- From the "Contours" menu, select "Add Structure"
- Enter the name of the stucture. This name can be preceded by a Unix style directory path
if you like (e.g., "/data/patients/patient01/left upper hippocampus"). However it is best
to avoid absolute paths if you want to be able to move the data to some other machine where
/data/patients/patient01/ might not exist before exporting the data as a UCF. You can use the
"Set Working Directory" item under the "File" menu to change the directory used to resolve
- Press the "OK" button
- If the structure has been successfully defined, the name that you entered will appear in the
control panel in the main window, and the text of the "Trace" button on the control panel will turn red
indicating that MultiTracer is now in tracing mode.
- You can repeat the above steps to define additional structures if you like.
Structures are only defined for one orientation. For example, if you defined a structure with the
images displayed transversely, that structure will not be accessible if you switch to a coronal or
sagittal display. If you want to trace the same structure in more than
one orientation, you will need to define unique names for the structure in each orientation (e.g.,
"coronal left hippocampus" and "sagittal left hippocampus".
If you have more than one structure defined for a given orientation, you can switch from one
structure to another in one of two ways:
- By selecting the structure you want in the control panel at the bottom of the main window
- By choosing "Next Structure" in the main window's "Contour" menu until the structure that
you want is displayed in the control panel at the bottom of the main window
©2001-2012 Roger P. Woods, M.D.
Modified: August 26, 2012